Welcome to XRStools’s documentation!¶
Contents:
- Installation
- Code Invocation
- GENERALITIES about XRS_swissknife
- Super Resolution
- to fit optical responses of all the analysers (you selected a ROI for) and the pixel response based on a foil scan
- to extrapolate to a larger extent the ROIS and the foils scan, thus to cover a larger sample
- to calculate the scalar product between a foil scan and a sample, for futher use in the inversion problem
- Other features
- Examples En Vrac
- VIDEOS
- Developers Corner
XRStools.roifinder_and_gui
ModuleXRStools.xrs_utilities
ModuleChi()
HRcorrect()
NNMFcost()
NNMFcost_der()
NNMFcost_old()
Omega()
Phi()
Rx()
Ry()
Rz()
TTsolver1D()
absCorrection()
abscorr2()
addch()
bidiag_reduction()
bootstrapCNNMF()
bootstrapCNNMF_old()
bragg()
bragg_refl
braggd()
cNNMF_chris()
cixsUBfind()
cixsUBgetAngles_primo()
cixsUBgetAngles_secondo()
cixsUBgetAngles_terzo()
cixsUBgetQ_primo()
cixsUBgetQ_secondo()
cixsUBgetQ_terzo()
cixs_primo()
cixs_secondo()
cixs_terzo()
compute_matrix_elements()
con2mat()
constrained_mf()
constrained_svd()
convertSplitEDF2EDF()
convg()
convtoprim()
cshift()
delE_JohannAberration()
delE_dicedAnalyzerIntrinsic()
delE_offRowland()
delE_pixelSize()
delE_sourceSize()
delE_stressedCrystal()
diode()
dspace()
dtxrd
dtxrd_anomalous_absorption()
dtxrd_extinction_length()
dtxrd_reflectivity()
e2pz()
edfread()
edfread_test()
element()
energy()
energy_monoangle()
fermi()
find_center_of_mass()
find_diag_angles()
fwhm()
gauss()
get_UB_Q()
get_gnuplot_rgb()
get_num_of_MD_steps()
getpenetrationdepth()
gettransmission()
hex2rgb()
hlike_Rwfn()
householder()
interpolate_M()
is_allowed_refl_fcc()
lindhard_pol()
makeprofile()
makeprofile_comp()
makeprofile_compds()
makepzprofile()
mat2con()
mat2vec()
maxipix_det
momtrans_au()
momtrans_inva()
mpr()
mpr_compds()
myprho()
nonzeroavg()
odefctn()
odefctn_CN()
parseformula()
plotpenetrationdepth()
plottransmission()
primtoconv()
pz2e1()
read_dft_wfn()
readbiggsdata()
readfio()
readp01image()
readp01scan()
readp01scan_rep()
savitzky_golay()
sgolay2d()
sigmainc()
specread()
spline2()
split_hdf5_address()
stiff_compl_matrix_Si()
sumx()
svd_my()
taupgen()
taupgen_amplitude()
tauphoto()
unconstrained_mf()
vangle()
vec2mat()
vrot()
vrot2()
xas_fluo_correct()
XRStools.XRStool
PackageXRStools.xrs_calctools
ModulealterGROatomNames()
axsfTrajParser()
boxParser()
broaden_diagram()
broaden_linear()
calculateCOMlist()
calculateRIJhist()
calculateRIJhist2_arb()
calculateRIJhist_arb()
changeOHBondLength()
convg()
countHbonds()
countHbonds_orig()
countHbonds_pbc()
count_HBonds_pbc_arb()
count_OO_neighbors()
count_OO_neighbors_pbc()
cut_spec()
erkale
findAllWaters()
findHexaneMolecules()
findMethanolMolecules()
findMolecule()
find_H2O_molecules()
find_H2O_molecules_PBC_arb()
gauss()
gauss1()
gauss_areanorm()
getDistVector()
getDistVectorPBC_arb()
getDistVectorPbc()
getDistance()
getDistancePBC_arb()
getDistancePbc()
getDistsFromMolecule()
getPeriodicTestBox()
getPeriodicTestBox_arb()
getPeriodicTestBox_molecules()
getTetraParameter()
getTranslVec()
getTranslVec_geocen()
groBoxParser()
groTrajecParser()
keithBoxParser()
load_erkale_spec()
load_erkale_specs()
load_stobe_specs()
parseOCEANinputFile()
parsePwscfFile()
parseVaspFile()
parseXYZfile()
readxas()
repair_h2o_molecules_pbc()
sorter()
spline2()
stobe
translateOcean2FDMNES_p1()
vaspBoxParser()
vaspTrajecParser()
writeFDMNESinput_file()
writeFEFFinput_arb()
writeMD1Input()
writeOCEAN_XESInput()
writeOCEANinput()
writeOCEANinput_arb()
writeOCEANinput_full()
writeOCEANinput_new()
writePWinuptFile()
writeRelXYZfile()
writeWFN1waterInput()
writeXYZfile()
writeXYZtrajectory()
xyzAtom
xyzBox
xyzMolecule
xyzTrajecParser()
xyzTrajectory
XRStools.xrs_extraction
ModuleXRStools.xrs_imaging
ModuleXRStools.xrs_read
ModuleXRStools.xrs_scans
ModuleXRStools.xrs_ComptonProfiles
ModuleXRStools.xrs_fileIO
ModuleEdfRead()
FabioEdfRead()
PrepareEdfMatrix()
PrepareEdfMatrix_TwoImages()
PyMcaEdfRead()
PyMcaSpecRead()
PyMcaSpecRead_my()
ReadEdfImages()
ReadEdfImages_PyMca()
ReadEdfImages_TwoImages()
ReadEdfImages_my()
ReadEdf_justFirstImage()
ReadScanFromFile()
SilxSpecRead()
SpecRead()
WriteScanToFile()
dump_on_file_list()
myEdfRead()
readbiggsdata()
XRStools.xrs_prediction
ModuleXRStools.xrs_rois
ModuleXRStools.xrs_utilities
ModuleChi()
HRcorrect()
NNMFcost()
NNMFcost_der()
NNMFcost_old()
Omega()
Phi()
Rx()
Ry()
Rz()
TTsolver1D()
absCorrection()
abscorr2()
addch()
bidiag_reduction()
bootstrapCNNMF()
bootstrapCNNMF_old()
bragg()
bragg_refl
braggd()
cNNMF_chris()
cixsUBfind()
cixsUBgetAngles_primo()
cixsUBgetAngles_secondo()
cixsUBgetAngles_terzo()
cixsUBgetQ_primo()
cixsUBgetQ_secondo()
cixsUBgetQ_terzo()
cixs_primo()
cixs_secondo()
cixs_terzo()
compute_matrix_elements()
con2mat()
constrained_mf()
constrained_svd()
convertSplitEDF2EDF()
convg()
convtoprim()
cshift()
delE_JohannAberration()
delE_dicedAnalyzerIntrinsic()
delE_offRowland()
delE_pixelSize()
delE_sourceSize()
delE_stressedCrystal()
diode()
dspace()
dtxrd
dtxrd_anomalous_absorption()
dtxrd_extinction_length()
dtxrd_reflectivity()
e2pz()
edfread()
edfread_test()
element()
energy()
energy_monoangle()
fermi()
find_center_of_mass()
find_diag_angles()
fwhm()
gauss()
get_UB_Q()
get_gnuplot_rgb()
get_num_of_MD_steps()
getpenetrationdepth()
gettransmission()
hex2rgb()
hlike_Rwfn()
householder()
interpolate_M()
is_allowed_refl_fcc()
lindhard_pol()
makeprofile()
makeprofile_comp()
makeprofile_compds()
makepzprofile()
mat2con()
mat2vec()
maxipix_det
momtrans_au()
momtrans_inva()
mpr()
mpr_compds()
myprho()
nonzeroavg()
odefctn()
odefctn_CN()
parseformula()
plotpenetrationdepth()
plottransmission()
primtoconv()
pz2e1()
read_dft_wfn()
readbiggsdata()
readfio()
readp01image()
readp01scan()
readp01scan_rep()
savitzky_golay()
sgolay2d()
sigmainc()
specread()
spline2()
split_hdf5_address()
stiff_compl_matrix_Si()
sumx()
svd_my()
taupgen()
taupgen_amplitude()
tauphoto()
unconstrained_mf()
vangle()
vec2mat()
vrot()
vrot2()
xas_fluo_correct()
XRStools.roifinder_and_gui
Module