Bayesian Mixture Analysis for Metagenomic Community Profiling


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Documentation for package ‘metaMix’ version 0.3

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bayes.model.aver Bayesian Model Averaging
bayes.model.aver.explicit Bayesian Model Averaging
generative.prob Compute generative probabilities from BLAST output
generative.prob.nucl Compute generative probabilities from BLAST output
parallel.temper Parallel Tempering MCMC
parallel.temper.explicit Parallel Tempering MCMC
parallel.temper.nucl Parallel Tempering MCMC
parallel.temper.nucl.explicit Parallel Tempering MCMC
reduce.space Reduce the space of potential species by fitting the mixture model with all potential species as categories
reduce.space.explicit Reduce the space of potential species by fitting the mixture model with all potential species as categories
step1 Example output of generative.prob() for use in the vignette/examples
step2 Example output of reduce.space() for use in the vignette/examples
step3 Example output of parallel.temper() for use in the vignette/examples