cogent3

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  • Alignments & Sequences
  • Phylogenetic Trees

Image Gallery¶

We use Plotly as our backend for visualisation. It provides excellent graph interactivity in Jupyter notebooks.

Alignments & Sequences¶

Sequence Features
Sequence logos
Information analysis of an alignment
Counting gaps per sequence
Assess alignment quality via dotplots
Dotplot with annotated sequences
Dotplot basics
Coevolution analysis

Phylogenetic Trees¶

Showing Bootstrap Support
Square Dendrogram Style
Radial Dendrogram Style
Circular Dendrogram Style
Angular Dendrogram Style

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Created using Sphinx 7.3.7.