libStatGen Software 1
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SamHeaderHD.cpp
1/*
2 * Copyright (C) 2010 Regents of the University of Michigan
3 *
4 * This program is free software: you can redistribute it and/or modify
5 * it under the terms of the GNU General Public License as published by
6 * the Free Software Foundation, either version 3 of the License, or
7 * (at your option) any later version.
8 *
9 * This program is distributed in the hope that it will be useful,
10 * but WITHOUT ANY WARRANTY; without even the implied warranty of
11 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 * GNU General Public License for more details.
13 *
14 * You should have received a copy of the GNU General Public License
15 * along with this program. If not, see <http://www.gnu.org/licenses/>.
16 */
17
18#include "SamHeaderHD.h"
19
20// Constructor
21SamHeaderHD::SamHeaderHD()
22{
23 // Add required tags for this type.
24 myType = SamHeaderRecord::HD;
25 myTypeString = "HD";
26 addRequiredTag("VN");
27 myKeyTag.clear();
28}
29
30
31// Destructor
32SamHeaderHD::~SamHeaderHD()
33{
34}
35
36
37const char* SamHeaderHD::getSortOrder()
38{
39 return(getTagValue("SO"));
40}
41
42
43SamHeaderRecord* SamHeaderHD ::createCopy() const
44{
45 SamHeaderHD* newHD = new SamHeaderHD();
46 if(newHD == NULL)
47 {
48 std::cerr << "Failed to create a copy of an HD Header Record\n" ;
49 return(NULL);
50 }
51 internalCopy(*newHD);
52
53 return(newHD);
54}
This class encapsulates the tag value pairs contained with a SAM Header line with accessors for getti...
const char * getTagValue(const char *tag) const
Return the value associated with the specified tag.