libStatGen Software 1
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SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight Struct Reference

Public Attributes

int match
 
int misMatch
 
int insert
 
int del
 

Detailed Description

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType, typename Atype, typename Btype, typename QualityType, typename readIndexType, typename referenceIndexType>
struct SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight

Definition at line 139 of file SmithWaterman.h.

Constructor & Destructor Documentation

◆ weight()

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType , typename Atype , typename Btype , typename QualityType , typename readIndexType , typename referenceIndexType >
SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight::weight ( )
inline

Definition at line 141 of file SmithWaterman.h.

142 {
143 match=2;
144 misMatch=-1;
145 insert=-1;
146 del=-1;
147 };

Member Data Documentation

◆ del

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType , typename Atype , typename Btype , typename QualityType , typename readIndexType , typename referenceIndexType >
int SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight::del

Definition at line 152 of file SmithWaterman.h.

◆ insert

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType , typename Atype , typename Btype , typename QualityType , typename readIndexType , typename referenceIndexType >
int SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight::insert

Definition at line 151 of file SmithWaterman.h.

◆ match

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType , typename Atype , typename Btype , typename QualityType , typename readIndexType , typename referenceIndexType >
int SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight::match

Definition at line 149 of file SmithWaterman.h.

◆ misMatch

template<int maxReadLengthH, int maxReferenceLengthH, typename HCellType , typename Atype , typename Btype , typename QualityType , typename readIndexType , typename referenceIndexType >
int SmithWaterman< maxReadLengthH, maxReferenceLengthH, HCellType, Atype, Btype, QualityType, readIndexType, referenceIndexType >::weight::misMatch

Definition at line 150 of file SmithWaterman.h.


The documentation for this struct was generated from the following file: