Package jebl.evolution.alignments
Interface Patterns
- All Known Subinterfaces:
Alignment
- All Known Implementing Classes:
BasicAlignment
,BootstrappedAlignment
,JackknifedAlignment
,ResampledAlignment
public interface Patterns
An interface representing a set of site patterns.
- Version:
- $Id: Patterns.java 185 2006-01-23 23:03:18Z rambaut $
- Author:
- Andrew Rambaut, Alexei Drummond
-
Method Summary
-
Method Details
-
getPatternCount
int getPatternCount() -
getPatternLength
int getPatternLength() -
getPatterns
Get a list of all the patterns- Returns:
- the list
-
getTaxa
- Returns:
- the list of taxa that the state values correspond to.
-
getSequenceType
SequenceType getSequenceType()- Returns:
- the data type of the states in these site patterns.
-