Uses of Class
jebl.evolution.sequences.CodonState
Packages that use CodonState
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Uses of CodonState in jebl.evolution.sequences
Fields in jebl.evolution.sequences declared as CodonStateModifier and TypeFieldDescriptionstatic final CodonState[]
Codons.CANONICAL_STATES
static final CodonState
Codons.GAP_STATE
static final CodonState[]
Codons.STATES
static final CodonState
Codons.UNKNOWN_STATE
Methods in jebl.evolution.sequences that return CodonStateModifier and TypeMethodDescriptionstatic CodonState
Codons.getGapState()
static CodonState
Codons.getState
(int index) static CodonState
Gets the state object for the given code.static CodonState
Codons.getState
(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3) static CodonState
Codons.getUnknownState()
static CodonState[]
Convert an array of nucleotide states into an array of codon statesstatic CodonState[]
Codons.toStateArray
(byte[] indexArray) static CodonState[]
Codons.toStateArray
(String sequenceString) Methods in jebl.evolution.sequences that return types with arguments of type CodonStateModifier and TypeMethodDescriptionGeneticCode.getCodonsForAminoAcid
(AminoAcidState aminoAcidState) GeneticCode.getStartCodons()
GeneticCode.getStopCodons()
Methods in jebl.evolution.sequences with parameters of type CodonStateModifier and TypeMethodDescriptionGeneticCode.getTranslation
(CodonState codonState) Returns the state associated with AminoAcid represented by codonState.static boolean
Codons.isGap
(CodonState state) boolean
GeneticCode.isStartCodon
(CodonState codonState) Deprecated.boolean
GeneticCode.isStopCodon
(CodonState codonState) Deprecated.static boolean
Codons.isUnknown
(CodonState state) static NucleotideState[]
Codons.toNucleotides
(CodonState state)