Package jebl.evolution.align.scores
Class AminoAcidScores
java.lang.Object
jebl.evolution.align.scores.Scores
jebl.evolution.align.scores.AminoAcidScores
- All Implemented Interfaces:
ScoreMatrix
- Direct Known Subclasses:
Blosum45
,Blosum50
,Blosum55
,Blosum60
,Blosum62
,Blosum65
,Blosum70
,Blosum75
,Blosum80
,Blosum85
,Blosum90
,Pam100
,Pam110
,Pam120
,Pam130
,Pam140
,Pam150
,Pam160
,Pam170
,Pam180
,Pam190
,Pam200
,Pam210
,Pam220
,Pam230
,Pam240
,Pam250
- Version:
- $Id: AminoAcidScores.java 360 2006-06-22 07:42:48Z pepster $
- Author:
- Alexei Drummond
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Field Summary
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class jebl.evolution.align.scores.Scores
duplicate, forMatrix, getMatrixString, getScore, includeAdditionalCharacters, includeGaps, toString
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Constructor Details
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AminoAcidScores
public AminoAcidScores() -
AminoAcidScores
public AminoAcidScores(float m, float n)
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Method Details
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getName
- Returns:
- human readable name
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getAlphabet
- Returns:
- a string containing the valid characters for this score matrix.
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