Uses of Interface
jebl.evolution.coalescent.IntervalList
Packages that use IntervalList
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Uses of IntervalList in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement IntervalListModifier and TypeClassDescriptionclass
A concrete class for a set of coalescent intevals.Methods in jebl.evolution.coalescent with parameters of type IntervalListModifier and TypeMethodDescriptionstatic final double
Coalescent.calculateAnalyticalLogLikelihood
(IntervalList intervals) Calculates the log likelihood of this set of coalescent intervals, using an analytical integration over theta.static final double
Coalescent.calculateLogLikelihood
(IntervalList intervals, DemographicFunction demographicFunction) Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static int
IntervalList.Utils.getLineageCount
(IntervalList intervals, double t) Constructors in jebl.evolution.coalescent with parameters of type IntervalListModifierConstructorDescriptionCoalescent
(IntervalList intervals, DemographicFunction demographicFunction)