Package jebl.evolution.substmodel
Class AminoAcidModel
java.lang.Object
jebl.evolution.substmodel.AbstractRateMatrix
jebl.evolution.substmodel.AminoAcidModel
- All Implemented Interfaces:
Serializable
,Cloneable
,RateMatrix
- Direct Known Subclasses:
WAG
base class of rate matrices for amino acids
- Version:
- $Id: AminoAcidModel.java 185 2006-01-23 23:03:18Z rambaut $
- Author:
- Korbinian Strimmer
- See Also:
-
Method Summary
Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
Methods inherited from interface jebl.evolution.substmodel.RateMatrix
getUniqueName