Package org.biojava.nbio.structure.align.gui
package org.biojava.nbio.structure.align.gui
-
ClassDescriptionA class that obtains two structures via DAS and aligns them This is done in a separate thread.A JFrame that allows to trigger a pairwise structure alignment, either from files in a directory, or after manual upload.Ask the user to provide a directory containting PDB files.A utility class for visualistion of structure alignmentsDisplays the dot plot trace for an alignment.Tracks Memory allocated & used, displayed in graph form.Create the menus for structure alignment GUI windows (JFrames).Creates a frame to display a DotPlotPanel.A class that obtains structures via DAS and aligns them.A JFrame that allows to trigger a multiple structure alignment, either from files in a directory or after manual upload.Utility Class that provides helper methods for the visualization of
MultipleAlignment
s.Loads an alignment in an XML format and displays its content in a new Jmol panel.Shows the interatomic Distance Matrices of all the Structures aligned in different Frames.Save an alignment to a specified File by the user.UI forConfigStrucAligParams
, for the AlignmentGUI.A Panel that allows user to specify PDB & chain ID, as well as sub-ranges