Needle
An application for fast and efficient searches of NGS data.
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estimate.hpp
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1// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
5#pragma once
6
7#include <filesystem>
8
9#include "shared.hpp"
10
19{
20 std::filesystem::path search_file;
21 std::filesystem::path path_in{"./"};
22 // false: no normalization method, true: division by first expression value
24};
25
30void call_estimate(estimate_ibf_arguments & args, estimate_arguments & estimate_args);
void call_estimate(estimate_ibf_arguments &args, estimate_arguments &estimate_args)
Function, which calls the estimate function.
Definition estimate.cpp:306
The arguments necessary for a search.
Definition estimate.hpp:19
bool normalization_method
Definition estimate.hpp:23
std::filesystem::path path_in
Definition estimate.hpp:21
std::filesystem::path search_file
Definition estimate.hpp:20
arguments used for estimate, ibf, ibfmin
Definition shared.hpp:39