Here is a list of all variables with links to the classes they belong to:
- s -
- sampleEnzyme : pwiz::data::pepxml::MSMSRunSummary
- samplePtr : pwiz::identdata::SpectrumIdentificationItem, pwiz::msdata::Run
- samplePtrs : pwiz::msdata::MSData
- samples : pwiz::identdata::AnalysisSampleCollection, pwiz::math::MatchedFilter::SampledData< space_type >
- scalings : pwiz::analysis::CwtPeakDetector
- scan : pwiz::util::MSIHandler::Record
- scanCount : pwiz::util::MSIHandler::Record
- scanEvent : pwiz::msdata::SpectrumInfo
- scanEventSet_ : pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
- scanFirst : pwiz::util::MSIHandler::Record
- scanLast : pwiz::util::MSIHandler::Record
- scanList : pwiz::msdata::Spectrum
- scanNumber : pwiz::data::peakdata::Scan, pwiz::msdata::SpectrumInfo, TestSpectrumInfo
- scanNumberRange : pwiz::analysis::RegionAnalyzer::Config
- scanNumbers : pwiz::msdata::SpectrumIterator::Config
- scanNumberSet_ : pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- scans : pwiz::data::peakdata::PeakData, pwiz::msdata::ScanList
- scanSettingsPtr : pwiz::msdata::InstrumentConfiguration
- scanSettingsPtrs : pwiz::msdata::MSData
- scanTimeHigh_ : pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- scanTimeLow_ : pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- scanTimes : precursorGroup
- scanWindows : pwiz::msdata::Scan
- score : pwiz::analysis::PrecursorRecalculator::PrecursorInfo, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo, pwiz::data::peakdata::Feature, pwiz::data::peakdata::PeakFamily, pwiz::data::pepxml::Match
- sd_peak_mz : pwiz::analysis::RegionAnalyzer::Stats
- search_engine : pwiz::analysis::PepxmlRecordReader
- search_id : pwiz::data::pepxml::SearchSummary
- search_scores : pwiz::analysis::PepxmlRecordReader::record
- searchDatabase : pwiz::data::pepxml::SearchSummary, pwiz::identdata::Inputs, pwiz::identdata::SpectrumIdentification
- searchDatabasePtr : pwiz::identdata::DBSequence
- searchEngine : pwiz::data::pepxml::SearchSummary
- searchHit : pwiz::data::pepxml::SearchResult
- searchId : pwiz::data::pepxml::SearchResult
- searchID : pwiz::data::pepxml::SearchSummary
- searchNbhdCalculator : pwiz::data::pepxml::MatchData
- searchResult : pwiz::data::pepxml::SpectrumQuery
- searchScore : pwiz::data::pepxml::SearchHit
- searchSummary : pwiz::data::pepxml::MSMSRunSummary
- searchType : pwiz::identdata::SpectrumIdentificationProtocol
- second : Root
- secondHandler_ : RootHandler
- selectedIons : pwiz::msdata::Precursor
- sense : pwiz::data::pepxml::Specificity, pwiz::identdata::PepXMLSpecificity
- sensitivity : pwiz::data::pepxml::RocDataPoint
- seq : pwiz::identdata::DBSequence, pwiz::identdata::dbsequence_p, pwiz::identdata::seq_p, pwiz::identdata::sequence_p
- sequence : pwiz::peptideid::PeptideID::Record, pwiz::proteome::IPIFASTADatabase::Record, pwiz::tradata::Peptide, pwiz::tradata::Protein, TestFragmentation, TestModifiedPeptide, TestPeptide
- sequenceCollection : pwiz::identdata::IdentData
- sha1_ : pwiz::util::SHA1SymmetricFilter
- sha1Calculator_ : pwiz::msdata::SHA1OutputObserver
- sieve : pwiz::msdata::SpectrumIterator::Config
- sigma_ : ralab::base::filter::utilities::Gauss< TReal >, ralab::base::filter::utilities::Gauss_1deriv< TReal >, ralab::base::filter::utilities::Mexican_Hat2< TReal >, ralab::base::filter::utilities::Mexican_Hat< TReal >
- sigVal_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- simAsSpectra : pwiz::msdata::Reader::Config
- simplepicker_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- simulatedIntensityRankSum : pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedKLs : pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedSSEs : pwiz::analysis::SpectrumList_ChargeFromIsotope
- sinBx_ : ParametrizedCosine
- singlyChargedFraction : TestChargeStateCalculator
- siteRegexp : pwiz::identdata::Enzyme
- size : pwiz::minimxml::SAXParser::Handler::Attributes
- sizeInDbEntries : pwiz::data::pepxml::SearchDatabase
- sizeOfResidues : pwiz::data::pepxml::SearchDatabase
- sl_ : pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer, pwiz::analysis::SpectrumList_IonMobility
- smoothedintensity_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- smoothwith_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- software : pwiz::data::peakdata::PeakData
- softwareName : pwiz::identdata::AnalysisSoftware
- softwarePtr : pwiz::msdata::InstrumentConfiguration, pwiz::msdata::ProcessingMethod, pwiz::tradata::Prediction, pwiz::tradata::RetentionTime
- softwarePtrs : pwiz::msdata::MSData, pwiz::tradata::TraData
- sort : pwiz::identdata::Serializer_Text::Config
- sortBy : pwiz::analysis::PrecursorRecalculatorDefault::Config
- source : pwiz::data::peakdata::Software
- sourceFile : pwiz::identdata::Inputs
- sourceFilename : pwiz::analysis::MSDataAnalyzer::DataInfo, pwiz::data::peakdata::PeakData
- sourceFilePosition : pwiz::msdata::ChromatogramIdentity, pwiz::msdata::SpectrumIdentity
- sourceFilePositionForBinarySpectrumData : pwiz::msdata::SpectrumIdentityFromXML
- sourceFilePtr : pwiz::msdata::Precursor, pwiz::msdata::Scan, pwiz::msdata::Spectrum
- sourceFilePtrs : pwiz::msdata::FileDescription, pwiz::msdata::ScanSettings
- specificity : pwiz::data::pepxml::SampleEnzyme
- specificityRules : pwiz::identdata::SearchModification
- spectra : pwiz::msdata::SpectrumListSimple
- spectraData : pwiz::identdata::Inputs
- spectraDataPtr : pwiz::identdata::SpectrumIdentificationResult
- spectraPerCycle_ : pwiz::analysis::PrecursorMaskCodec
- spectrum : pwiz::analysis::PepxmlRecordReader::record, pwiz::data::pepxml::SpectrumQuery, pwiz::msdata::SpectrumListCache::CacheEntry
- spectrumCache_ : pwiz::msdata::SpectrumListCache
- spectrumID : pwiz::identdata::SpectrumIdentificationResult, pwiz::msdata::Precursor, pwiz::msdata::Scan
- spectrumIdentification : pwiz::identdata::AnalysisCollection
- spectrumIdentificationItem : pwiz::identdata::SpectrumIdentificationResult
- spectrumIdentificationItemPtr : pwiz::identdata::PeptideHypothesis
- spectrumIdentificationList : pwiz::identdata::AnalysisData
- spectrumIdentificationListPtr : pwiz::identdata::SpectrumIdentification
- spectrumIdentificationProtocol : pwiz::identdata::AnalysisProtocolCollection
- spectrumIdentificationProtocolPtr : pwiz::identdata::SpectrumIdentification
- spectrumIdentificationResult : pwiz::identdata::SpectrumIdentificationList
- spectrumIdentities : pwiz::analysis::SpectrumList_ScanSummer
- spectrumIDFormat : pwiz::identdata::SpectraData
- spectrumIndices_ : pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer
- spectrumList : DemuxTest::MSDPair, pwiz::analysis::IsolationWindowFilter
- spectrumList_ : DemuxDebugRWTest
- spectrumListPtr : pwiz::msdata::Run
- spectrumQueries : pwiz::data::pepxml::MSMSRunSummary
- spectrumQuery : pwiz::data::pepxml::Match
- spotID : pwiz::msdata::SpectrumIdentity
- sprank : pwiz::analysis::PepxmlRecordReader::record
- spscore : pwiz::analysis::PepxmlRecordReader::record
- srmAsSpectra : pwiz::msdata::Reader::Config
- standardDeviation : pwiz::analysis::Noise
- start : pwiz::analysis::Peak, pwiz::identdata::PeptideEvidence
- start_ : pwiz::util::Timer
- startScan : pwiz::data::pepxml::SpectrumQuery
- startTimeStamp : pwiz::msdata::Run
- stop : pwiz::analysis::Peak
- subSamples : pwiz::identdata::Sample
- substitutionModification : pwiz::identdata::Peptide
- sum_peak_intensity : pwiz::analysis::RegionAnalyzer::Stats
- sum_sumIntensity : pwiz::analysis::RegionAnalyzer::Stats
- sumIntensity : pwiz::analysis::RegionAnalyzer::SpectrumStats
- summ_ : ralab::base::resample::SamplingWith
- summaryXML : pwiz::data::pepxml::MSMSPipelineAnalysis
- sumRanks : scoreChain
- sw_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- symbol : pwiz::chemistry::detail::Element, pwiz::chemistry::Element::Info::Record, pwiz::data::pepxml::AminoAcidModification, pwiz::proteome::AminoAcid::Info::Record, TestAminoAcid
- synonym : pwiz::chemistry::detail::Element