Package pal.tree
Class UPGMATree
java.lang.Object
pal.tree.SimpleTree
pal.tree.UPGMATree
- All Implemented Interfaces:
Serializable
,IdGroup
,Report
,Units
,UnitsProvider
,Tree
Deprecated.
Use ClusterTree
constructs a UPGMA tree from pairwise distances
- Version:
- $Id: UPGMATree.java,v 1.10 2002/12/05 04:27:28 matt Exp $
- Author:
- Korbinian Strimmer, Alexei Drummond
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
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Field Summary
Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class pal.tree.SimpleTree
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber
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Constructor Details
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UPGMATree
Deprecated.constructor UPGMA tree- Parameters:
m
- distance matrix
-