Uses of Interface
pal.statistics.LikelihoodEvaluator
Packages that use LikelihoodEvaluator
Package
Description
Classes with useful for statistics (normal distribution,
Gamma distribution, chi-square distribution, exponential distribution,
likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
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Uses of LikelihoodEvaluator in pal.statistics
Methods in pal.statistics that return LikelihoodEvaluatorModifier and TypeMethodDescriptionstatic final LikelihoodEvaluator
LikelihoodEvaluator.Utils.createSimpleEvaluator
(SubstitutionModel model) Create a simple evaluator that uses UnrootedTreeSearchConstructors in pal.statistics with parameters of type LikelihoodEvaluatorModifierConstructorDescriptionGeneralTopologyPool
(Tree[] topologies, LikelihoodEvaluator baseCalculator, ReplicateLikelihoodEvaluator replicateCalculator, Alignment baseAlignment, AlignmentGenerator replicateGenerator)