Uses of Interface
pal.distance.DistanceMatrixAccess
Packages that use DistanceMatrixAccess
Package
Description
Classes for reading and generating distance matrices, including computation
of pairwise distances for sequence data (maximum-likelihood and observed
distances).
-
Uses of DistanceMatrixAccess in pal.distance
Methods in pal.distance that return DistanceMatrixAccessModifier and TypeMethodDescriptionstatic DistanceMatrixAccess
DistanceMatrixAccess.Utils.createEvolutionary
(Alignment a, SubstitutionModel sm) static DistanceMatrixAccess
DistanceMatrixAccess.Utils.createSimple
(DistanceMatrix base) -
Uses of DistanceMatrixAccess in pal.supgma
Methods in pal.supgma with parameters of type DistanceMatrixAccessModifier and TypeMethodDescriptionSUPGMABase.process
(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver) Constructors in pal.supgma with parameters of type DistanceMatrixAccessModifierConstructorDescriptionSUPGMABase
(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)