Uses of Class
pal.tree.SimpleTree

Packages that use SimpleTree
Package
Description
 
Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).
  • Uses of SimpleTree in pal.supgma

    Subclasses of SimpleTree in pal.supgma
    Modifier and Type
    Class
    Description
    class 
    constructs an SUPGMA tree from pairwise distances.
  • Uses of SimpleTree in pal.tree

    Subclasses of SimpleTree in pal.tree
    Modifier and Type
    Class
    Description
    class 
     
    class 
    constructs a neighbor-joining tree from pairwise distances

    Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees.
    class 
    constructs a tree reading in a New Hampshire treefile, taking care for internal labels and branch lengths and binary/nonbinary and rooted/unrooted trees
    class 
    Deprecated.
    Use ClusterTree