Package pal.tree
Class ClusterTree
java.lang.Object
pal.tree.SimpleTree
pal.tree.ClusterTree
- All Implemented Interfaces:
Serializable
,IdGroup
,Report
,Units
,UnitsProvider
,Tree
- Direct Known Subclasses:
SUPGMATree
- See Also:
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic interface
An interface for describing Clustering methods To be updated to cope with Ward's method and others...Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
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Field Summary
FieldsModifier and TypeFieldDescriptionstatic final ClusterTree.ClusteringMethod
static final ClusterTree.ClusteringMethod
static final ClusterTree.ClusteringMethod
static final ClusterTree.ClusteringMethod
Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class pal.tree.SimpleTree
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber
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Field Details
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UPGMA
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WPGMA
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SINGLE_LINKAGE
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COMPLETE_LINKAGE
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Constructor Details
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ClusterTree
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